Miljø- og Fødevareudvalget 2015-16
MOF Alm.del Bilag 641
Offentligt
Clinical Infectious Diseases Advance Access published August 11, 2016
1
MRSA CC398 in humans and pigs in Norway: A “One Health” perspective on
introduction and transmission
Carl Andreas Grøntvedt
1,*
, Petter Elstrøm
2,*
, Marc Stegger
3,4
, Robert Leo Skov
3
, Paal
Skytt Andersen
3,4
, Kjersti Wik Larssen
5
, Anne Margrete Urdahl
1
, Øystein Angen
1,3
,
Vildershøj Bjørnholt
2,#
1
sc
r
Jesper Larsen
3
, Solfrid Åmdal
6
, Siri Margrete Løtvedt
6
, Marianne Sunde
1,2,#
, Jørgen
ipt
Downloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
2
The Norwegian Institute of Public Health, P.O. Box 4404 Nydalen, N-0403 Oslo, Norway
Statens Serum Institut, 5 Artillerivej, DK-2300 Copenhagen S, Denmark
Pathogen Genomics Division, Translational Genomics Research Institute (TGen), Flagstaff,
3
4
86001 Arizona, USA
5
St. Olavs Hospital, The Norwegian Reference Laboratory for MRSA, P.O. Box 3250
Sluppen, N-7006 Trondheim, Norway
6
The Norwegian Food Safety Authority, P.O. Box 383, N-2381 Brumunddal, Norway
Corresponding author: Carl Andreas Grøntvedt, The Norwegian Veterinary Institute, P.O.
Ac
Box 750 Sentrum, N-0106 Oslo, Norway, Tel: 00 47 23 21 63 87, Email: carl-
[email protected]
© The Author 2016. Published by Oxford University Press for the Infectious Diseases Society of
America.
This is an Open Access article distributed under the terms of the Creative Commons Attribution-
NonCommercial-NoDerivs licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which
permits non-commercial reproduction and distribution of the work, in any medium, provided the
original work is not altered or transformed in any way, and that the work is properly cited. For
commercial re-use, contact [email protected].
ce
pt
ed
M
an
u
The Norwegian Veterinary Institute, P.O. Box 750 Sentrum, N-0106 Oslo, Norway
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
2
*
contributed equally to this work
contributed equally to this work
#
Summary
CC398 into closed pig populations. Further, it demonstrates that
stringent control and
eradication measures were effective and prevented dissemination from pig farms to the
Downloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
general human population.
Abstract
Background
Emerging livestock-associated methicillin-resistant
Staphylococcus aureus
(LA-
MRSA) persist in livestock populations and represent a reservoir for transmission to humans.
Understanding the routes of introduction and further transmission is crucial to control this
threat to human health.
Methods
All notified cases of LA-MRSA (CC398) in humans and pigs in Norway between
2008 and 2014 were included. Data were collected during an extensive outbreak investigation,
including contact tracing and stringent surveillance. Whole-genome sequencing of isolates
Ac
from all human cases and pig farms was performed to support and expand the epidemiological
findings. The national strategy furthermore included a “search and destroy” policy at the pig
farm level.
Results
Three outbreak clusters were identified, including 26 pig farms, two slaughterhouses
and 36 humans. Primary introductions likely occurred by human transmission to three sow
ce
pt
ed
M
an
u
sc
r
The present study
provides strong and novel evidence that humans may introduce MRSA
ipt
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
3
farms with secondary transmission to other pig farms mainly through animal trade and to a
lesser extent via humans or livestock trucks. All MRSA CC398 isolated from humans without
an epidemiological link to the outbreaks were genetically distinct from isolates within the
outbreak clusters indicating limited dissemination to the general population.
Conclusions
This study identified preventable routes of MRSA CC398 introduction and
These findings are essential for keeping pig populations MRSA-free and from a One Health
perspective to prevent pig farms from becoming reservoirs for MRSA transmission to
sc
r
transmission: human occupational exposure, trade of pigs and livestock transport vehicles.
ipt
Downloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
Ac
ce
pt
ed
M
an
u
humans.
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
4
Introduction
Staphylococcus aureus
is one of the main causes of nosocomial and community-acquired
infections, and methicillin-resistant
S. aureus
(MRSA) infections are associated with
exclusively a healthcare-associated problem, but since the late 1990s, the epidemiology has
further from the mid-2000s by emerging MRSA strains with a primary reservoir in livestock
[3, 4].
Downloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
Livestock-associated MRSA (LA-MRSA) has now spread worldwide, especially in pig farms
where it is transmitted to humans mainly by occupational exposure [5-7]. In countries with a
low overall prevalence of MRSA in humans, like Denmark and the Netherlands, LA-MRSA
has greatly impacted the notification rate of MRSA in humans and is increasingly found in
people without livestock contact [8-10].
LA-MRSA in pig holdings in Europe most commonly belong to the clonal complex (CC) 398,
but the prevalence varies greatly among European countries, with up to 70% of all farms
positive in Denmark and the Netherlands [8, 11]. In contrast, several surveillance programs
conducted in Norway, including the 2008 EU baseline study and two more recent nationwide
population surveillance programs found either an absence or a very low prevalence of LA-
MRSA in pigs [12-14]. Trade in pigs has been identified as the major risk factor for inter-farm
Ac
transmission of LA-MRSA [15, 16], including transboundary transmission [17]. In the period
from 2000 to 2015, fewer than 80 live pigs were imported into the Norwegian commercial pig
population, most of these in two separate imports of 49 and 20 high-health breeding animals
from Finland and the Netherlands respectively [18]. In the latter the imported animals were
ce
pt
ed
M
an
u
sc
r
changed significantly with dissemination of community-associated MRSA (CA-MRSA) and
ipt
increased morbidity, mortality and costs [1, 2]. For a long time, MRSA was almost
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
5
tested and confirmed to be negative for MRSA. Thus, the Norwegian pig population is de
facto a “closed” production system.
The objective of the present study was to describe the first known introductions and
The study included all identified cases of MRSA CC398 in humans and pigs in Norway from
sc
r
M
an
u
2008-2014.
ipt
Downloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
transmission of MRSA CC398 in pig herds and the subsequent spread to humans in Norway.
Materials and methods
MRSA investigations in pigs
MRSA in the Norwegian pig population was first investigated in an EU baseline study in
2008, which did not detect LA-MRSA [12]. In 2011 and 2012, anonymized prevalence
studies demonstrated MRSA CC398 in a few samples from a single slaughterhouse and a pig
Norwegian pig population initiated a public health risk assessment concerning the possible
impacts of an increasing prevalence of LA-MRSA in pigs. This prompted an investigation to
identify and control the transmission of MRSA CC398 to pig farms and humans. Norwegian
authorities implemented a strategy including a farm level “search and destroy” policy to
prevent the establishment of LA-MRSA in the Norwegian pig population. In 2014, a
Ac
nationwide surveillance program of all sow farms (n=986) was initiated to investigate the
prevalence of MRSA in the pig population [19].
The outbreak-related investigation collected epidemiological data from farmers by
questionnaires (Table S1 in Supplementary Appendix) and included both human and animal
contact tracing. Demographic information, farm characteristics, husbandry and production
ce
pt
ed
herd [13, 14]. In early 2013, two independent identifiable findings of MRSA CC398 in the
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
6
details were collected. In total, 74 pig farms and five slaughterhouses were included and
sampled in the outbreak investigation during 2013 and 2014 (Supplementary Appendix 1).
MRSA investigations in humans
Human MRSA infections have been notifiable to the Norwegian surveillance system for
communicable diseases (MSIS) since 1995 and MRSA carriage has been notifiable since
2005 [20]. Humans are investigated for MRSA based on clinical signs of infection, admission
Downloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
MRSA CC398 cases notified to MSIS were included.
Epidemiological data on all persons occupationally exposed to pigs in the current outbreaks
were collected (Table S2 in Supplementary Appendix). Household members were sampled if
they were patients in healthcare institutions, worked as healthcare personnel, or if a farm or
abattoir worker was found to be MRSA positive. MRSA screening samples from humans
were collected from the vestibulum nasi, throat, and skin lesions (if present). In total, 272
persons were included.
Bacteriological analyses
All samples from animals and environment were investigated for MRSA using the protocol
Ac
described by the European Food Safety Authority [22]. Human MRSA samples taken as part
of the outbreak investigation were analyzed at seven medical microbiological laboratories
using slightly different methodologies (Supplementary Appendix 2).
ce
pt
ed
M
an
u
screening in healthcare facilities, contact tracing and outbreak investigations [21]. All human
sc
r
ipt
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
7
The national reference laboratory for MRSA confirmed presumptive MRSA isolates from
human, animal and environmental samples by PCR detection of the genes
mecA, spa
and PVL
using PCR protocols previously described [23, 24].
Spa-typing
was performed on all isolates
(http://www.seqnet.org/downloads.html). Multilocus sequence typing (MLST) was performed
on new
spa-types
as described by Enright et al [25].
phylogenetic analysis of MRSA CC398 from all pig farms and all human cases reported in
Norway, as well as selected MRSA CC398 isolates was performed (Supplementary Appendix
Downloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
Statistical analyses
The data were collected with the objective of prevention and control of transmission of
MRSA and not as a part of a planned scientific study. Stata Version 13 (Stata-Corp, College
Station, TX, USA) was used to calculate attack rates (AR) and odds ratio (OR) of MRSA
among persons distributed on occupational exposure and pig farms distributed on type of pig
production.
Results
Ac
Overview of MRSA CC398 in Norway
The first human case of MRSA CC398 was notified in March 2009, and by the end of 2014, a
total of 84 human cases had been reported, including human cases identified through outbreak
investigations (Figure 1).
ce
pt
ed
M
an
u
3).
sc
r
Whole-genome sequencing (WGS), detection of resistance and virulence markers, and
ipt
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
8
The first traceable finding of LA-MRSA in pigs occurred in February 2013, and by the end of
2014, outbreak investigations and surveillance had identified MRSA CC398 in 26 pig farms
farms and persons in three clusters located in, or originating from, central eastern (outbreaks 1
environment and humans in these three clusters belonged to the following CC398 associated
spa
types: t034 in outbreak 1, t034 and t12359 in outbreak 2 and t011 in outbreak 3. The
Downloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
Supplementary Appendix 4). MRSA CC398 detected in samples from a slaughterhouse in the
anonymized survey of 2011 (NORM-VET 2011) was shown by WGS to be related to isolates
in outbreak 1 (Figure 3). Most pig farms in outbreak 1 regularly supplied this slaughterhouse.
A single pig isolate from the 2012 survey and 48 human isolates not epidemiologically linked
to the three outbreaks described were all genetically distinct from the isolates in the outbreak
clades (Figure 3 and Supplementary Appendix 4). Based on information reported to MSIS, 25
(52%) of the human cases not linked to the outbreak clusters had likely acquired MRSA
CC398 abroad.
Introductions of MRSA CC398 to the pig population
Ac
The index cases in the three outbreaks were identified through samples collected from a post-
mortem examination of a fattening pig in February 2013 (outbreak 1), clinical infection in a
farm worker in June 2013 (outbreak 2) and in a national surveillance program of sow farms in
June 2014 (outbreak 3). Contact tracing identified two primary case sow farms having
ce
pt
ed
M
an
u
findings were further supported by WGS-based phylogenetic analysis (Figure 3 and
sc
r
and 3) and south-western (outbreak 2) Norway (Figure 2). MRSA isolates from animals,
ipt
(Table 1), two slaughterhouses and 36 humans (Table 2). Epidemiological data placed these
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
9
supplied the index case farms in outbreaks 1 and 2. The index case farm in outbreak 3 was
considered the primary case farm. All primary case farms had farm workers and/or
consultants originating from other European countries. The use of foreign labor was common,
as 24/62 (39%) and 4/63 (6%) of sow and finishing pig farm workers respectively, were of
non-Norwegian nationality. The majority of foreign workers (25/28) were from Eastern
Europe, while the remaining three were from Denmark (n=2) or the Netherlands (n=1). None
of the farms investigated had imported pigs from abroad. WGS data from both human and pig
isolates in outbreaks 1 and 2 demonstrated a close genetic relationship with isolates identified
Downloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
in Denmark, whereas isolates from outbreak 3 showed genetic relatedness to MRSA CC398
t011 strains from several European countries, including Denmark (Figure 3).
Further transmission
The trade of pigs was identified as the main route of MRSA CC398 transmission from the
three primary case farms. This was considered the most likely route of transmission to 19
farms. In three farms, the most probable explanation for transmission was through the mutual
use of farm workers or veterinary practitioners.
One farm had two separate introductions of MRSA CC398 (t034 and t011) based on
epidemiological information supported by WGS data, and was involved in both outbreaks 2
and 3. The trade of pigs or contact through personnel was excluded as the route of re-
Ac
introduction to this farm. A livestock transport vehicle had on two occasions transported pigs
from a MRSA CC398 positive finishing farm to a slaughterhouse without subsequent
disinfection shortly before transporting pigs to the farm involved and was considered the most
likely transmission route.
ce
pt
ed
M
an
u
sc
r
ipt
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
10
Pigs from MRSA CC398 positive farms were slaughtered at five different slaughterhouses in
southern Norway, and MRSA was detected in samples from pigs, personnel or the
environment in two of these (Figure 2).
In total, 48 of 74 farms sampled during outbreak investigations were identified as MRSA
negative. Twelve farms were sampled as they had supplied pigs to MRSA CC398 positive
the 51 farms that had received pigs from MRSA CC398 positive farms, 32 were MRSA
negative. Of these 32 farms, 14 had received pigs from farms in which MRSA CC398 had
Downloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
had changed suppliers and had washed and disinfected the premises before the change of
supplying herd.
Three were identified through notification to MSIS, and subsequently linked to the outbreaks
by epidemiological data, supported by WGS results (Figure 3 and Supplementary Appendix
4). All 36 persons had direct and regular contact with positive pigs (Table 2). No differences
in the MRSA prevalence between different types of occupational exposure were observed.
Discussion
Ac
The present study encompasses all identified cases of MRSA CC398 in humans and pigs in
Norway, between 2008 and 2014. All the traceable detections of MRSA CC398 in pig farms
and slaughterhouses clustered in three separate outbreaks. Furthermore, 43% (36/84) of all
human MRSA CC398 cases in the period were related to these outbreaks. The study strongly
suggests that the outbreaks were caused by human introduction of MRSA. Phylogenetic
ce
pt
ed
M
Of the 36 human cases included in the outbreaks, 33 were detected through contact tracing.
an
u
most likely only been recently introduced, 12 had been only sporadically supplied, and six
sc
r
farms, and four farms had contact through MRSA CC398 positive veterinary practitioners. Of
ipt
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
11
analysis revealed that the introduced MRSA strains were closely related to strains isolated in
other European countries. The isolates from the primary case farms in outbreaks 1 and 2
showed close genetic relatedness to MRSA CC398 isolates from Denmark, and persons linked
to the two farms had known contact with pig farms in Denmark. Further, the primary case
farm in outbreak 3 involved farm workers from abroad, although without confirmed livestock
contact outside Norway.
To our knowledge, the present study is the first to describe the importance of the human
introduction of MRSA CC398 to livestock populations. Since there is virtually no import of
Downloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
important route of introduction into the Norwegian pig population. Our findings are therefore
highly relevant for the future prevention of LA-MRSA introduction to pig populations, at both
the national level and farm level.
Based on other studies, the trade of pigs has been shown to be the predominant route of
transmission of MRSA CC398 among pigs [15, 16], including transboundary transmission
[17]. Domestic trade in pigs was found to be the main route of inter-farm transmission of
MRSA after primary introductions, indicating that limiting the number of farms connected
through trade is important in preventing MRSA transmission. In addition, we found humans
and in one case a livestock truck to be the most likely explanation for MRSA transmission to
farms not connected through the trade of pigs. These transmission routes may further
constitute routes of dissemination to other segments of the animal population.
Ac
Our results show that 32 of 51 pig farms which had purchased pigs from MRSA positive
suppliers were found to be MRSA negative at the time of sampling. This may be explained by
the supplying farms not being MRSA positive at the time of delivering the animals or that
management practices and hygiene routines prevented MRSA from becoming established in
ce
pt
ed
M
an
u
live pigs to Norway, human transmission of LA-MRSA should be regarded as the most
sc
r
ipt
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
12
the recipient farms, the latter being the most likely explanation in at least six farms. This
indicates that changing to a supplier with a MRSA negative herd (all in – all out) combined
with good routines for washing and disinfecting facilities may be effective measures to
prevent MRSA establishment on finishing pig farms. These findings are supported by results
from the Norwegian control strategy for LA-MRSA in the pig population, and may be
relevant also for pig farms in other countries [26].
Other studies have identified direct contact, and to a lesser extent indirect contact to positive
animals as a major risk factor for MRSA CC398 in humans [5, 27, 28]. In addition, an
sc
r
ipt
Downloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
farms has been described from areas with a high density of pig herds [8, 9, 29]. In the present
study, we did not observe the transmission of MRSA CC398 from the outbreaks to the general
public. This may be partly explained by the relatively short exposure times, as all pigs on
MRSA CC398 positive farms were slaughtered and the holding facilities thoroughly washed
and disinfected.
Public health surveillance data from Norway show that more than one third of all notified
human MRSA cases have acquired MRSA abroad [12, 30]. An increased prevalence of
MRSA on Norwegian pig farms could change this epidemiological situation by constituting a
new domestic reservoir for MRSA, leading to an increase of the total public health burden of
MRSA. Such a development has been described in Denmark, where the rapid spread of
MRSA CC398 in the pig population has led this to be the dominant clone found in humans
Ac
[8]. The rapid increase of MRSA CC398 in humans in other low endemic countries and the
results from the present study, highlights the importance of control measures to prevent the
introduction and further transmission of MRSA CC398 in pig populations. The present
Norwegian control strategy includes targeted screening of personnel before working in pig
herds, annual national surveillance of the pig population and contact tracing with eradication
ce
pt
ed
M
an
u
increased incidence rate of MRSA CC398 in the general public without contact with pig
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
13
measures, resembling a “search and destroy” strategy. The preliminary results of testing in
herds following the implementation of MRSA eradication measures show that this has largely
been an effective strategy [26].
Some of the data described here were collected in order to control outbreaks and, although
extensive, were not fully comprehensive. Only household contacts of MRSA CC398-positive
the detection of further spread. The WGS analysis was compared to available sequences
primarily from Denmark, thus the relatedness to isolates from other countries was explored to
Downloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
the active surveillance programs in the pig population together with mandatory notification of
all human MRSA diagnoses, giving a near-complete description of MRSA CC398 in Norway.
In conclusion, this study confirms that the trade of pigs and occupational exposure are the
major risk factors for transmission of MRSA CC398 between humans and pigs. However, the
primary introductions leading to the three outbreak clusters cannot be explained by the trade
of animals. In these cases, both the epidemiological and the WGS data indicate that these
introductions were the result of human-to-animal transmission. In addition, further
transmission likely occurred via humans and livestock transport vehicles to farms not
connected to MRSA CC398 positive farms through the trade of live animals. These findings
have important implications for risk management to prevent the dissemination of MRSA
CC398 among farms. In Norway, we believe that the prevention of human introduction of
Ac
LA-MRSA is of the utmost importance for the current ambitious strategy to control LA-
MRSA to prove feasible and successful in the longer term.
ce
pt
ed
M
an
u
a lesser extent. The major strengths of the study are the extensive outbreak investigations and
sc
r
occupationally exposed humans were screened, thus bias may have been introduced regarding
ipt
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
14
Contributors
Outbreak investigations (PE, MS, AMU, JVB, SÅ, SML), data collection (CAG, PE, MS,
AMU, JVB, SÅ, SML, JL, KWL, ØA), data analysis and interpretation (CAG, PE, MS,
MSt). CAG and PE contributed equally as shared first authors with the primary responsibility
authors. All authors contributed to revising the manuscript and approved the final version.
Acknowledgments
sc
r
of writing and revising the manuscript. MS and JVB contributed equally as shared senior
ipt
Downloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
AMU, JVB, KWL, RLS, JL, PSA, MSt, ØA), preparing tables and figures (PE, CAG and
We would like to acknowledge the dedicated efforts of Bjørn Lium (DVM, Dr.Sci.) in the
outbreak investigation and Berit Tafjord Heier (DVM, PhD) for preparing the maps. We thank
the Norwegian Food Safety Authority, Public Health Officers, the Norwegian Pig Health
Service and the people involved from the pig production sector for their contributions and
cooperation in the outbreak investigations. The following laboratories provided samples and
data: the Norwegian Veterinary Institute (Oslo, Norway), St. Olav Hospital (Trondheim,
Norway), Stavanger University Hospital (Stavanger, Norway), Fürst Medical Laboratory
(Oslo, Norway), Vestre Viken Hospital Trust (Drammen, Norway), Sørlandet Hospital HF
(Kristiansand, Norway), Akershus University Hospital (Lørenskog, Norway), Vestfold
Hospital Trust (Tønsberg, Norway), Sykehuset Innlandet Trust (Lillehammer, Norway) and
Statens Serum Institute (Copenhagen, Denmark).
Ac
Funding
This work was supported by the Norwegian Food Safety Authority; the Norwegian Veterinary
Institute; The Norwegian Institute of Public Health; Statens Serum Institut and St. Olavs
Hospital. The funders of the study had no role in study design, data collection, data analysis
ce
pt
ed
M
an
u
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
15
and interpretation, or writing of the report. The corresponding author had full access to all the
data in the study and had final responsibility for the decision to submit for publication.
Conflicts of interest
JL reports grants from the National Institute of Allergy and Infectious Diseases (Grant/Award
Number 1R01AI101371-01A1), outside the submitted work. MSt has a patent (13/379,499)
with royalties.
sc
r
M
an
u
ipt
Downloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
Ac
ce
pt
ed
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
16
References
1.
Cosgrove SE, Sakoulas G, Perencevich EN, Schwaber MJ, Karchmer AW, Carmeli Y.
Comparison of mortality associated with methicillin-resistant and methicillin-
susceptible
Staphylococcus aureus
bacteremia: A meta-analysis. Clin Infect Dis
2003;36:53-9.
2.
Koeck R, Becker K, Cookson B, et al. Methicillin-resistant
Staphylococcus aureus
(MRSA): burden of disease and control challenges in Europe. Euro Surveill
2010;15:12-20.
sc
r
ipt
Downloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
3.
Chambers HF, Deleo FR. Waves of resistance:
Staphylococcus aureus
in the
antibiotic era. Nat Rev Microbiol
2009;7:629-41.
4.
Voss A, Loeffen F, Bakker J, Klaassen C, Wulf M. Methicillin-resistant
Staphylococcus aureus
in pig farming. Emerg Infect Dis
2005;11:1965-6.
6.
7.
Ac
8.
2032.
ce
pt
ed
Med Microbiol
2011;301:630-4.
5.
Graveland H, Duim B, Van Duijkeren E, Heederik D, Wagenaar JA. Livestock-
associated methicillin-resistant
Staphylococcus aureus
in animals and humans. Int J
Koeck R, Schaumburg F, Mellmann A, et al. Livestock-Associated Methicillin-
Resistant
Staphylococcus aureus
(MRSA) as Causes of Human Infection and
Colonization in Germany. Plos One
2013;8:e55040.
Verkade E, Kluytmans J. Livestock-associated
Staphylococcus aureus
CC398:
Animal reservoirs and human infections. Infect Gen Evol
2014;21:523-30.
DANMAP 2014. Use of antimicrobial agents and occurrence of antimicrobial
resistance in bacteria from food animals, food and humans in Denmark. ISSN 1600-
M
an
u
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
17
9.
Larsen J, Petersen A, Sorum M, et al. Meticillin-resistant
Staphylococcus aureus
CC398 is an increasing cause of disease in people with no livestock contact in
Denmark, 1999 to 2011. Euro Surveill
2015;20:5-13.
10.
van Cleef BA, Monnet DL, Voss A, et al. Livestock-associated methicillin-resistant
Staphylococcus aureus
in humans, Europe. Emerg Infect Dis
2011;17:502-5.
11.
Broens EM, Graat EAM, Van Der Wolf PJ, Van De Giessen AW, De Jong MCM.
in The Netherlands. Prev Vet Med
2011;102:41-9.
12.
EFSA. Analysis of the baseline survey on the prevalence of methicillin-resistant
Downloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
Part A: MRSA prevalence estimates. EFSA Journal EFSA (European Food Safety
Authority), 2009.
13.
NORM/NORM-VET 2011. Usage of antimicrobial agents and occurrence of
antimicrobial resistance in Norway. Tromsø/Oslo 2012. ISSN 1502-2307.
14.
NORM/NORM-VET 2012. Usage of antimicrobial agents and occurrence of
antimicrobial resistance in Norway. Tromsø/Oslo 2013. ISSN 1502-2307.
15.
16.
17.
Ac
18.
ce
pt
ed
chain. Prev Vet Med
2011;98:182-9.
Vet Rec
2012;170:564.
Broens EM, Graat EAM, van der Wolf PJ, et al. MRSA CC398 in the pig production
Espinosa-Gongora C, Broens EM, Moodley A, Nielsen JP, Guardabassi L.
Transmission of MRSA CC398 strains between pig farms related by trade of animals.
EFSA. Analysis of the baseline survey on the prevalence of methicillin-resistant
Staphylococcus aureus
(MRSA) in holdings with breeding pigs, in the EU,
2008
- Part
B: factors associated with MRSA contamination of holdings. EFSA Journal EFSA
(European Food Safety Authority), 2010.
KOORIMP. Annual report 2014 (in Norwegian) KOORIMP and KIF: The Norwegian
Livestock Industry's Biosecurity Unit (KOORIMP), 2014.
M
an
u
Staphylococcus aureus
(MRSA) in holdings with breeding pigs, in the EU,
2008
[1] -
sc
r
Prevalence and risk factor analysis of livestock associated MRSA-positive pig herds
ipt
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
18
19.
Urdahl AM, Bergsjø B, Hofshagen M, Nordstöm M, Lium B. The surveillance
programme for methicillin resistant
Staphylococcus aureus
in pigs in Norway 2014.
Annual report. Available at:
http://www.vetinst.no/Publikasjoner/Overvaakingsprogrammer-OK/2014/The-
surveillance-programme-for-methicillinresistant-Staphylococcus-aureus-in-pigs-in-
Norway-in-2014. Accessed 30 November 2015.
20.
(MSIS). Available at: https://lovdata.no/dokument/SF/forskrift/2003-06-20-
740?q=MSIS2003. Accessed 15 February 2016.
21.
sc
r
Regulation on the Norwegian Surveillance System for Communicable Diseases
ipt
Downloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
resistant
Staphylococcus aureus
in Norway, a low-incidence country, 2006-2010. J
Hosp Infect
2012;80:36-40.
22.
EFSA. Technical specifications on the harmonised monitoring and reporting of
antimicrobial resistance in methicillin-resistant
Staphylococcus aureus
in food-
producing animals and food. EFSA Journal: EFSA (European Food Safety Authority),
2012.
23.
24.
Ac
26.
25.
ce
pt
ed
Lina G, Piemont Y, Godail-Gamot F, et al. Involvement of Panton-Valentine
leukocidin-producing
Staphylococcus aureus
in primary skin infections and
pneumonia. Clin Infect Dis
1999;29:1128-32.
Murakami K, Minamide W, Wada K, Nakamura E, Teraoka H, Watanabe S.
Identification of methicillin-resistant strains of
Staphylococci
by polymerase chain-
reaction. J Clin Microbiol
1991;29:2240-4.
Enright MC, Day NPJ, Davies CE, Peacock SJ, Spratt BG. Multilocus sequence
typing for characterization of methicillin-resistant and methicillin-susceptible clones of
Staphylococcus aureus.
J Clin Microbiol
2000;38:1008-15.
Grøntvedt CA, Sunde M, Angen Ø, et al. Control of LA-MRSA in swine - Is it
possible? Lessons learned from outbreaks and eradication in Norway. 4th ASM-
M
an
u
Elstrom P, Kacelnik O, Bruun T, Iversen B, Hauge SH, Aavitsland P. Meticillin-
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
19
ESCMID Conference on methicillin-resistant
Staphylococci
in animals, Nov 4, 2015,
Chicago, Illinois, USA.
27.
Garcia-Graells C, Antoine J, Larsen J, Catry B, Skov R, Denis O. Livestock
veterinarians at high risk of acquiring methicillin-resistant
Staphylococcus aureus
ST398. Epidemiol Infect
2012;140:383-9.
28.
Graveland H, Wagenaar JA, Bergs K, Heesterbeek H, Heederik D. Persistence of
contact. Plos One
2011;6:
e16830.
29.
Feingold BJ, Silbergeld EK, Curriero FC, van Cleef B, Heck M, Kluytmans J.
sc
r
Livestock Associated MRSA CC398 in humans is dependent on intensity of animal
ipt
Downloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
Staphylococcus aureus,
the Netherlands. Emerg Infect Dis
2012;18:1841-9.
30.
NORM/NORM-VET 2014. Usage of antimicrobial agents and occurrence of
antimicrobial resistance in Norway. Tromsø/Oslo 2015. ISSN 1502-2307.
Ac
ce
pt
ed
M
an
u
Livestock density as risk factor for livestock-associated methicillin-resistant
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
20
Figure Legends:
Figure 1.
Notified cases of human MRSA involving CC398 in Norway, from the first case in March 2009 until
Figure 2.
Geographical distribution of (A) MRSA CC398 positive farms (circles), slaughterhouses (triangles),
and (B) MRSA CC398 positive farm or slaughterhouse workers in outbreak one (red), two (blue) and three
(yellow). In A, negative farms and slaughterhouses are indicated in green. Insert in A depicting Norway in
Europe with box highlighting focus area in A and B.
Downloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
Figure 3. Phylogenetic analysis for understanding diversity and spread of CC398 MRSA isolates in
Norway.
The phylogenetic relationship was inferred using maximum likelihood based on 4,854 SNPs in 271
isolates. The human-adapted (HuA) and livestock-associated (LA) clades are highlighted. Identified outbreaks in
relation to Norwegian livestock were identified and highlighted; Outbreak 1 (red), outbreak 2 (blue), and
outbreak 3 (yellow). Genotypic and epidemiological data are represented encircling the topology. Inner circle
represent Norwegian isolates (solid), Danish pig-production isolates (empty), and others (blank). Middle circle
represent the sample environment with livestock, meat and environmental samples (solid) and human isolates
(empty). Outer circle depicts the occurrence of specific fluoroquinolone-associated resistance mutations in
gyrA
(Ser84Leu) and
parC
(Ser80Tyr).
Ac
ce
pt
ed
M
an
u
sc
r
ipt
December 2014.
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
1667876_0021.png
21
Table 1:
MRSA outbreaks: The number and type of pig farms sampled and results from MRSA analysis.
Outbreak 1
N
1
Pos
2
AR(%)
3
Outbreak 2
N
1
Pos
2
AR(%)
3
Outbreak 3
N
1
Pos
2
AR(%)
3
Total
N
1
Sow farms
Finishing
pig farms
Total
1
7
19
3
9
(42
·
9)
(47·4)
16
28*
3
8*
(18·8)
(28·6)
1
3*
1
2*
sc
r
(100·0)
(66·7)
24
49
7
(28·0)
(36·7)
18
(75·0)
74
26
(35·1)
ipt
Pos
2
AR(%)
3
OR
4
Ref.
1.26
(95%
CI)
(0·50 –
3·57)
Downloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
26
12
(46·2)
44
11
(25·0)
4
3
Number of pig farms sampled (one farm included in both outbreak 2 and 3)
2
Number of pig farms found positive of MRSA (*one farm included in both outbreak 2 and 3)
Attack rate
Odds ratio
3
4
Ac
ce
pt
ed
M
an
u
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
1667876_0022.png
22
Table 2:
Results of case tracing of persons, distributed by the type of known exposure to MRSA
Outbreak 1
N
1
Pos
2
AR(%)
3
Outbreak 2
N
1
Pos
2
AR(%)
3
Outbreak 3
N
1
Pos
2
AR(%)
3
Total
N
1
pig farm
Working in
finishing pig farm
Veterinary
practitioner
Working in
slaughterhouse
Household
members
Total
1
sc
r
-
63
9
(14·3)
-
15
3
(20·0)
-
124
10
(8·06)
-
-
-
-
(25·0)
272
36
(13·2)
Working in sow
19
10
(52·6)
39
3
(7·7)
4
1
(25·0)
62
29
5
(17·2)
34
4
(11·8)
-
-
ipt
Pos
2
AR(%)
3
OR
4
14
(22·6)
Ref.
0·63
0·89
0·36
-
(95%
CI)
(0·24 –
1·57)
Downloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
an
u
-
-
-
-
4
1
11
2
(18·2)
4
1
(25·0)
-
-
(0·16 –
3.17)
(0·14 –
0·86)
-
107
9
(8·4)
17
1
(5·9)
5
0
(0·0)
3
0
(0·0)
171
26
(15·2)
97
9
Number of humans sampled
2
3
Attack rate
Odds ratio
4
Ac
ce
pt
ed
Number of humans found positive of MRSA
M
(9·3)
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
1667876_0023.png
ownloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
Persons found positive with MRSA CC398 without known contact to pig herds in Norway
Persons found positive with MRSA CC398
spa-type
t034 in outbreak 1
Persons found positive with MRSA CC398
spa-type
t034 or t12359 in outbreak 2
Persons found positive with MRSA CC398
spa-type
t011 in outbreak 3
1 2 3 4 5 6 7 8 9 10 11 12 1 2 3 4 5 6 7 8 9 10 11 12 1 2 3 4 5 6 7 8 9 10 11 12 1 2 3 4 5 6 7 8 9 10 11 12 1 2 3 4 5 6 7 8 9 10 11 12 1 2 3 4 5 6 7 8 9 10 11 12
2009
2010
2011
2012
2013
2014
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
1667876_0024.png
ownloaded from
http://cid.oxfordjournals.org/
by guest on September 14, 2016
BB
A
MOF, Alm.del - 2015-16 - Bilag 641: Henvendelse af 23/9-16 fra Dansk Svineavl, vedrørende resistente bakterier og MRSA CC398
1667876_0025.png
FQ-mutations
Origin
Country
HuA
LA